U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Hopxos HOP homeobox, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 102637820, updated on 8-Feb-2024

Summary

Go to the top of the page Help
Official Symbol
Hopxosprovided by MGI
Official Full Name
HOP homeobox, opposite strandprovided by MGI
Primary source
MGI:MGI:3801917
See related
AllianceGenome:MGI:3801917
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm15830
Expression
Biased expression in genital fat pad adult (RPKM 1.5), cerebellum adult (RPKM 1.0) and 4 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Hopxos in Genome Data Viewer
Location:
5 C3.3; 5 41.45 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (77246086..77250160)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (77098830..77102313)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_13457 Neighboring gene microRNA 12199 Neighboring gene STARR-seq mESC enhancer starr_13458 Neighboring gene HOP homeobox Neighboring gene predicted gene, 57746 Neighboring gene STARR-seq mESC enhancer starr_13459 Neighboring gene predicted gene 15831 Neighboring gene STARR-seq mESC enhancer starr_13460 Neighboring gene VISTA enhancer mm770 Neighboring gene STARR-seq mESC enhancer starr_13461 Neighboring gene predicted gene, 34598

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Clone Names

  • AC165975.2

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    77246086..77250160
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_880408.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials