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Gm28888 predicted gene 28888 [ Mus musculus (house mouse) ]

Gene ID: 102636823, updated on 8-Feb-2024

Summary

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Official Symbol
Gm28888provided by MGI
Official Full Name
predicted gene 28888provided by MGI
Primary source
MGI:MGI:5579594
See related
AllianceGenome:MGI:5579594
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in genital fat pad adult (RPKM 3.2), testis adult (RPKM 0.5) and 3 other tissues See more
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Genomic context

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Location:
1 D; 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (88387897..88425016)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (88460175..88497294)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel, subfamily M, member 8 Neighboring gene STARR-seq mESC enhancer starr_01631 Neighboring gene secreted phosphoprotein 2 Neighboring gene STARR-seq mESC enhancer starr_01632 Neighboring gene STARR-seq mESC enhancer starr_01633 Neighboring gene predicted gene 29538 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:90371230-90371404 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:90372096-90372342 Neighboring gene glutamine repeat protein 1 Neighboring gene predicted gene, 19589

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    88387897..88425016
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_387232.2 RNA Sequence

  2. XR_387231.3 RNA Sequence

  3. XR_878354.1 RNA Sequence

  4. XR_387236.3 RNA Sequence

Nucleotide Protein
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