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Zfp640 zinc finger protein 640 [ Mus musculus (house mouse) ]

Gene ID: 102636110, updated on 8-Feb-2024

Summary

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Official Symbol
Zfp640provided by MGI
Official Full Name
zinc finger protein 640provided by MGI
Primary source
MGI:MGI:2678025
See related
AllianceGenome:MGI:2678025
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Mzf6d
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Genomic context

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See Zfp640 in Genome Data Viewer
Location:
13 B3; 13 34.53 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (66817010..66828867, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (66670274..66680803, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53203 Neighboring gene STARR-seq mESC enhancer starr_34877 Neighboring gene STARR-seq mESC enhancer starr_34878 Neighboring gene predicted gene, 46429 Neighboring gene STARR-seq mESC enhancer starr_34879 Neighboring gene STARR-seq mESC enhancer starr_34880 Neighboring gene predicted gene, 18412 Neighboring gene STARR-seq mESC enhancer starr_34881 Neighboring gene vomeronasal 2, receptor, pseudogene 106 Neighboring gene predicted gene, 40988 Neighboring gene STARR-seq mESC enhancer starr_34883 Neighboring gene predicted gene, 52033

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. MZF6D, a novel KRAB zinc-finger gene expressed exclusively in meiotic male germ cells. Looman C, et al. DNA Cell Biol, 2003 Aug. PMID 14565865
  2. Identification and validation of PDGF transcriptional targets by microarray-coupled gene-trap mutagenesis. Chen WV, et al. Nat Genet, 2004 Mar. PMID 14981515
  3. PDGF signaling specificity is mediated through multiple immediate early genes. Schmahl J, et al. Nat Genet, 2007 Jan. PMID 17143286
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
acts_upstream_of_or_within face morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within fibroblast migration IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within platelet-derived growth factor receptor signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of fibroblast migration IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of multicellular organism growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within roof of mouth development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within skeletal system morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: zinc finger protein 431-like
Names
Kruppel associated box containing

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    66817010..66828867 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030247511.2 → XP_030103371.2  LOW QUALITY PROTEIN: zinc finger protein 431-like

    Conserved Domains (3) summary
    COG5048
    Location:77 → 462
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:81 → 101
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 44
    KRAB; KRAB box
Nucleotide Protein Strain
Heading Accession and Version

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