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Gm16685 predicted gene, 16685 [ Mus musculus (house mouse) ]

Gene ID: 102634900, updated on 8-Feb-2024

Summary

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Official Symbol
Gm16685provided by MGI
Official Full Name
predicted gene, 16685provided by MGI
Primary source
MGI:MGI:4439609
See related
Ensembl:ENSMUSG00000097804 AllianceGenome:MGI:4439609
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
NAIL; mNAIL
Expression
Broad expression in thymus adult (RPKM 1.2), spleen adult (RPKM 0.8) and 15 other tissues See more
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Genomic context

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Location:
3 2.02 cM; 3 A1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (7677765..7755061)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (7612705..7690001)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 23592 Neighboring gene zinc finger, C2HC-type containing 1A Neighboring gene STARR-seq mESC enhancer starr_06837 Neighboring gene STARR-seq mESC enhancer starr_06838 Neighboring gene STARR-seq mESC enhancer starr_06840 Neighboring gene interleukin 7 Neighboring gene STARR-seq mESC enhancer starr_06841 Neighboring gene STARR-seq mESC enhancer starr_06842 Neighboring gene STARR-seq mESC enhancer starr_06843 Neighboring gene STARR-seq mESC enhancer starr_06844 Neighboring gene STARR-seq mESC enhancer starr_06846 Neighboring gene STARR-seq mESC enhancer starr_06847 Neighboring gene RIKEN cDNA 1700010I02 gene Neighboring gene predicted gene, 29747

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. NAIL: an evolutionarily conserved lncRNA essential for licensing coordinated activation of p38 and NFκB in colitis. Akıncılar SC, et al. Gut, 2021 Oct. PMID 33239342, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_168341.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125373, AC140984
    Related
    ENSMUST00000181286.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    7677765..7755061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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