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Gm13652 predicted gene 13652 [ Mus musculus (house mouse) ]

Gene ID: 102634853, updated on 8-Feb-2024

Summary

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Official Symbol
Gm13652provided by MGI
Official Full Name
predicted gene 13652provided by MGI
Primary source
MGI:MGI:3650033
See related
Ensembl:ENSMUSG00000087333 AllianceGenome:MGI:3650033
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in genital fat pad adult (RPKM 5.6) and kidney adult (RPKM 0.7) See more
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Genomic context

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Location:
2 C3; 2 44.41 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (74955106..74968319, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (75124762..75137975, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene ribosomal protein S8 pseudogene Neighboring gene STARR-seq mESC enhancer starr_04858 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:74857649-74857758 Neighboring gene STARR-seq mESC enhancer starr_04859 Neighboring gene STARR-seq mESC enhancer starr_04860 Neighboring gene STARR-seq mESC enhancer starr_04861 Neighboring gene predicted gene, 46748 Neighboring gene RIKEN cDNA 2600014E21 gene Neighboring gene ribosomal protein S6, pseudogene 4 Neighboring gene predicted gene 13653

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes. Rodríguez-Carballo E, et al. Genes Dev, 2017 Nov 15. PMID 29273679, Free PMC Article
  2. Multiple enhancers regulate Hoxd genes and the Hotdog LncRNA during cecum budding. Delpretti S, et al. Cell Rep, 2013 Oct 17. PMID 24075990
  3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    74955106..74968319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_374685.4 RNA Sequence

    Related
    ENSMUST00000143898.2

  2. XR_866469.2 RNA Sequence

  3. XR_866470.3 RNA Sequence

  4. XR_866467.4 RNA Sequence

  5. XR_866468.2 RNA Sequence

  6. XR_866471.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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