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Lhx5as1 LIM homeobox 5, antisense 1 [ Mus musculus (house mouse) ]

Gene ID: 102634302, updated on 16-Apr-2024

Summary

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Official Symbol
Lhx5as1provided by MGI
Official Full Name
LIM homeobox 5, antisense 1provided by MGI
Primary source
MGI:MGI:5521042
See related
Ensembl:ENSMUSG00000098649 AllianceGenome:MGI:5521042
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm27199; Gm31976
Expression
Biased expression in CNS E14 (RPKM 8.8), whole brain E14.5 (RPKM 7.6) and 3 other tissues See more
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Genomic context

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Location:
5 F; 5
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (120557721..120569832, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (120419656..120431767, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:120575005-120575261 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:120575328-120575529 Neighboring gene VISTA enhancer mm144 Neighboring gene predicted gene 10390 Neighboring gene RNA binding motif protein 19 Neighboring gene predicted gene, 31836 Neighboring gene STARR-seq mESC enhancer starr_14234 Neighboring gene LIM homeobox protein 5 Neighboring gene serine dehydratase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Single-cell transcriptomics of the early developing mouse cerebral cortex disentangle the spatial and temporal components of neuronal fate acquisition. Moreau MX, et al. Development, 2021 Jul 15. PMID 34170322
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_166585.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC129553
    Related
    ENSMUST00000185026.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    120557721..120569832 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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