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Gm4779 predicted gene 4779 [ Mus musculus (house mouse) ]

Gene ID: 102634296, updated on 8-Feb-2024

Summary

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Official Symbol
Gm4779provided by MGI
Official Full Name
predicted gene 4779provided by MGI
Primary source
MGI:MGI:3646776
See related
Ensembl:ENSMUSG00000045010 AllianceGenome:MGI:3646776
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG212753
Summary
Orthologous to human CXorf49B (chromosome X open reading frame 49B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 4.5), placenta adult (RPKM 0.9) and 1 other tissue See more
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Genomic context

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See Gm4779 in Genome Data Viewer
Location:
X D; X 44.66 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (100833938..100838074, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (101790332..101794468, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene tumor protein, translationally-controlled, pseudogene 6 Neighboring gene ribosomal protein SA pseudogene Neighboring gene RIKEN cDNA 8030474K03 gene Neighboring gene ribosomal protein SA pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Interactome mapping of the phosphatidylinositol 3-kinase-mammalian target of rapamycin pathway identifies deformed epidermal autoregulatory factor-1 as a new glycogen synthase kinase-3 interactor. Pilot-Storck F, et al. Mol Cell Proteomics, 2010 Jul. PMID 20368287, Free PMC Article
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC102634296
Names
uncharacterized protein CXorf49 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374240.1 → NP_001361169.1  uncharacterized protein LOC102634296

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the protein-coding transcript.
    Source sequence(s)
    AL805980
    Consensus CDS
    CCDS90741.1
    UniProtKB/TrEMBL
    A0A1B0GR91
    Related
    ENSMUSP00000147427.2, ENSMUST00000147742.9
    Conserved Domains (1) summary
    pfam15483
    Location:74 → 552
    DUF4641; Domain of unknown function (DUF4641)

RNA

  1. NR_164366.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL805980

  2. NR_164367.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL805980

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    100833938..100838074 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_387015.4 RNA Sequence

  2. XR_878190.3 RNA Sequence

  3. XR_878189.3 RNA Sequence

  4. XR_878188.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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