U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Gm15518 predicted gene 15518 [ Mus musculus (house mouse) ]

Gene ID: 102633939, updated on 8-Feb-2024

Summary

Go to the top of the page Help
Official Symbol
Gm15518provided by MGI
Official Full Name
predicted gene 15518provided by MGI
Primary source
MGI:MGI:3801752
See related
AllianceGenome:MGI:3801752
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in frontal lobe adult (RPKM 2.4), cortex adult (RPKM 2.0) and 12 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Gm15518 in Genome Data Viewer
Location:
16 B5; 16 31.08 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (49580066..49596270, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (49759703..49775907, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_40969 Neighboring gene predicted gene, 31494 Neighboring gene STARR-positive B cell enhancer ABC_E765 Neighboring gene STARR-seq mESC enhancer starr_40970 Neighboring gene intraflagellar transport 57 Neighboring gene predicted gene, 52251 Neighboring gene STARR-positive B cell enhancer ABC_E10908 Neighboring gene STARR-positive B cell enhancer ABC_E9165 Neighboring gene STARR-seq mESC enhancer starr_40971 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:49818780-49819076 Neighboring gene predicted gene, 16619 Neighboring gene STARR-seq mESC enhancer starr_40972 Neighboring gene predicted gene 4633 Neighboring gene CD47 antigen (Rh-related antigen, integrin-associated signal transducer)

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    49580066..49596270 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001781902.2 RNA Sequence

  2. XR_003951928.1 RNA Sequence

  3. XR_001781901.2 RNA Sequence

  4. XR_003951927.1 RNA Sequence

  5. XR_003951926.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases