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AA387200 expressed sequence AA387200 [ Mus musculus (house mouse) ]

Gene ID: 102633593, updated on 8-Feb-2024

Summary

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Official Symbol
AA387200provided by MGI
Official Full Name
expressed sequence AA387200provided by MGI
Primary source
MGI:MGI:3034170
See related
AllianceGenome:MGI:3034170
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in whole brain E14.5 (RPKM 1.5), CNS E14 (RPKM 1.2) and 4 other tissues See more
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Genomic context

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Location:
2 G3; 2 74.83 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (151916775..151923362, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (152074855..152081444, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_06034 Neighboring gene family with sequence similarity 110, member A Neighboring gene STARR-positive B cell enhancer ABC_E6000 Neighboring gene solute carrier protein family 52, member 3 Neighboring gene STARR-seq mESC enhancer starr_06039 Neighboring gene STARR-positive B cell enhancer ABC_E11171 Neighboring gene STARR-seq mESC enhancer starr_06041 Neighboring gene STARR-seq mESC enhancer starr_06043 Neighboring gene scratch family zinc finger 2 Neighboring gene predicted gene, 31475

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    151916775..151923362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_375121.4 RNA Sequence

  2. XR_375122.2 RNA Sequence

  3. XR_866857.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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