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Peak1os pseudopodium-enriched atypical kinase 1, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 102633516, updated on 8-Feb-2024

Summary

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Official Symbol
Peak1osprovided by MGI
Official Full Name
pseudopodium-enriched atypical kinase 1, opposite strandprovided by MGI
Primary source
MGI:MGI:5477083
See related
AllianceGenome:MGI:5477083
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm26589
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
9 B; 9
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (56148628..56232426)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (56241344..56325142)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:55937639-55937826 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:55938770-55938923 Neighboring gene STARR-positive B cell enhancer ABC_E10547 Neighboring gene STARR-seq mESC enhancer starr_24202 Neighboring gene proline-serine-threonine phosphatase-interacting protein 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:55994441-55994594 Neighboring gene STARR-positive B cell enhancer ABC_E6737 Neighboring gene tetraspanin 3 Neighboring gene pseudopodium-enriched atypical kinase 1 Neighboring gene STARR-positive B cell enhancer mm9_chr9:56112222-56112523 Neighboring gene STARR-seq mESC enhancer starr_24203 Neighboring gene STARR-seq mESC enhancer starr_24204 Neighboring gene STARR-positive B cell enhancer ABC_E1385 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:56266337-56266490 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:56266643-56266962 Neighboring gene high mobility group 20A Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:56313127-56313350 Neighboring gene ubiquitin-conjugating enzyme E2S, retrotransposed Neighboring gene STARR-seq mESC enhancer starr_24205 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:56354440-56354627 Neighboring gene predicted gene, 53524

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    56148628..56232426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004935784.1 RNA Sequence

  2. XR_004935783.1 RNA Sequence

  3. XR_004935785.1 RNA Sequence

  4. XR_003948324.2 RNA Sequence

  5. XR_004935786.1 RNA Sequence

  6. XR_001779176.3 RNA Sequence

  7. XR_870776.4 RNA Sequence

  8. XR_004935787.1 RNA Sequence

  9. XR_004935788.1 RNA Sequence

Nucleotide Protein Strain
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