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Gm13479 predicted gene 13479 [ Mus musculus (house mouse) ]

Gene ID: 102632514, updated on 8-Feb-2024

Summary

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Official Symbol
Gm13479provided by MGI
Official Full Name
predicted gene 13479provided by MGI
Primary source
MGI:MGI:3651869
See related
AllianceGenome:MGI:3651869
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
2 B; 2 27.37 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (45280326..45328916)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (45390314..45438836)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene zinc finger E-box binding homeobox 2 Neighboring gene STARR-seq mESC enhancer starr_04403 Neighboring gene zinc finger E-box binding homeobox 2, opposite strand Neighboring gene STARR-positive B cell enhancer mm9_chr2:45049987-45050287 Neighboring gene STARR-seq mESC enhancer starr_04405 Neighboring gene STARR-seq mESC enhancer starr_04406 Neighboring gene VISTA enhancer mm1737 Neighboring gene STARR-seq mESC enhancer starr_04408 Neighboring gene viral integration site 1 Neighboring gene STARR-seq mESC enhancer starr_04409 Neighboring gene STARR-seq mESC enhancer starr_04410 Neighboring gene predicted gene, 30728 Neighboring gene STARR-seq mESC enhancer starr_04411 Neighboring gene predicted gene, 30792 Neighboring gene predicted gene, 30848

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    45280326..45328916
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001783294.3 RNA Sequence

  2. XR_001783293.3 RNA Sequence

  3. XR_001783291.2 RNA Sequence

  4. XR_001783292.2 RNA Sequence

  5. XR_374339.4 RNA Sequence

  6. XR_003953822.1 RNA Sequence

  7. XR_003953823.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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