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Lbhd1 LBH domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 102308570, updated on 10-Mar-2024

Summary

Official Symbol
Lbhd1provided by MGI
Official Full Name
LBH domain containing 1provided by MGI
Primary source
MGI:MGI:5516029
See related
Ensembl:ENSMUSG00000096740 AllianceGenome:MGI:5516029
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm21743
Summary
This gene shares three exons in common with another gene, the RIKEN cDNA 1810009A15 gene (GeneID:66276), but the encoded protein uses a reading frame that is different from that of the RIKEN cDNA 1810009A15 gene. [provided by RefSeq, Nov 2017]
Expression
Broad expression in CNS E11.5 (RPKM 23.7), liver E14 (RPKM 17.8) and 25 other tissues See more
Orthologs
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Genomic context

Location:
19 A; 19
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (8861242..8868123)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (8883878..8890759)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_45500 Neighboring gene UBX domain protein 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:8955290-8955473 Neighboring gene ubiquinol-cytochrome c reductase complex assembly factor 3 Neighboring gene RIKEN cDNA 5730408K05 gene Neighboring gene RIKEN cDNA 1810009A15 gene Neighboring gene STARR-positive B cell enhancer ABC_E11017 Neighboring gene small nucleolar RNA, H/ACA box 57 Neighboring gene microRNA 5136 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:8967434-8967543 Neighboring gene integrator complex subunit 5 Neighboring gene STARR-positive B cell enhancer ABC_E4265 Neighboring gene alpha glucosidase 2 alpha neutral subunit

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General protein information

Preferred Names
LBH domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001286103.1NP_001273032.1  LBH domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    AC129217, CK619869
    Consensus CDS
    CCDS79682.1
    UniProtKB/TrEMBL
    A0A087WPA0
    Related
    ENSMUSP00000139692.2, ENSMUST00000187504.7
    Conserved Domains (1) summary
    pfam15317
    Location:1101
    Lbh; Cardiac transcription factor regulator, Developmental protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    8861242..8868123
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)