U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RNVU1-19 RNA, variant U1 small nuclear 19 [ Homo sapiens (human) ]

Gene ID: 101954277, updated on 8-Nov-2023

Summary

Official Symbol
RNVU1-19provided by HGNC
Official Full Name
RNA, variant U1 small nuclear 19provided by HGNC
Primary source
HGNC:HGNC:48324
See related
Ensembl:ENSG00000275538 AllianceGenome:HGNC:48324
Gene type
snRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
vU1.13; vU1.19; RNU1-126; RNU1-147; RNVU1-13
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
1p11.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (120850819..120850985, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (120860219..120860386, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (149514090..149514256, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1249 Neighboring gene notch 2 N-terminal like R Neighboring gene NBPF member 26 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1250 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1602 Neighboring gene tRNA-Asn (anticodon GTT) 7-1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1603 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1251 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:147993136-147993980 Neighboring gene uncharacterized LOC124904393 Neighboring gene peptidylprolyl isomerase A like 4A Neighboring gene uncharacterized LOC100996720 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:149577239-149577777 Neighboring gene long intergenic non-protein coding RNA 623

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • RNA, variant U1 small nuclear 13

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables pre-mRNA 5'-splice site binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in mRNA 5'-splice site recognition IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104086.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC253572
    Related
    ENST00000613023.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    120850819..120850985 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791753.1 Reference GRCh38.p14 PATCHES

    Range
    461312..461478 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    120860219..120860386 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)