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LOC101930100 uncharacterized LOC101930100 [ Homo sapiens (human) ]

Gene ID: 101930100, updated on 26-Oct-2023

Summary

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Gene symbol
LOC101930100
Gene description
uncharacterized LOC101930100
See related
Ensembl:ENSG00000278932
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
21p11.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (9325048..9369212)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (2208879..2253368)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr21:9922701-9922962 Neighboring gene tektin 4 pseudogene 2 Neighboring gene MPRA-validated peak4333 silencer Neighboring gene SOWAHC pseudogene 2 Neighboring gene sorting nexin 18 pseudogene 11 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:9988843-9989025 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:9999495-9999996 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:10177673-10178174 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:10178175-10178674 Neighboring gene putative ankyrin repeat domain-containing protein 20A12 Neighboring gene protein FAM182A-like Neighboring gene NCOR1 pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188301.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CR381653
    Related
    ENST00000686553.1

  2. NR_188302.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CR381653

  3. NR_188303.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CR381653

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    9325048..9369212
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    2208879..2253368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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