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PDE4DIPP4 PDE4DIP pseudogene 4 [ Homo sapiens (human) ]

Gene ID: 101929798, updated on 10-Oct-2023

Summary

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Official Symbol
PDE4DIPP4provided by HGNC
Official Full Name
PDE4DIP pseudogene 4provided by HGNC
Primary source
HGNC:HGNC:55083
See related
Ensembl:ENSG00000290904 AllianceGenome:HGNC:55083
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CH17-118O6.3
Expression
Broad expression in testis (RPKM 1.8), bone marrow (RPKM 1.0) and 24 other tissues See more
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Genomic context

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Location:
1p11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (120985692..121052167, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (120995082..121061551, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 (PATCHES) NW_003871056.3 (1057266..1123741, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 623 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144310745-144311448 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:144481363-144482061 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:144480662-144481362 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:149619223-149619776 Neighboring gene RNA, variant U1 small nuclear 4 Neighboring gene NBPF member 6 pseudogene Neighboring gene family with sequence similarity 91 member A4, pseudogene Neighboring gene uncharacterized LOC124904640 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:149672741-149673242 Neighboring gene tRNA-Phe (anticodon GAA) 10-1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:149675697-149676198 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1253 Neighboring gene tRNA-Gly (CCC) 6-1 Neighboring gene tRNA-Val (anticodon CAC) 5-1 Neighboring gene myomegalin-like Neighboring gene tRNA-Asn (anticodon GTT) 27-1 Neighboring gene ubiquitin-conjugating enzyme E2 D4-like Neighboring gene H3 histone pseudogene 4 Neighboring gene uncharacterized LOC100996318 Neighboring gene Fc gamma receptor Ib, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • myomegalin-like
  • phosphodiesterase 4D interacting protein pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135813.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BI828172, DB221055
    Related
    ENST00000612313.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    120985692..121052167 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    120995082..121061551 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases