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LINC01655 long intergenic non-protein coding RNA 1655 [ Homo sapiens (human) ]

Gene ID: 101929771, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01655provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1655provided by HGNC
Primary source
HGNC:HGNC:52443
See related
AllianceGenome:HGNC:52443
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 4.3) See more
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Genomic context

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See LINC01655 in Genome Data Viewer
Location:
1q41
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (221827666..221840666, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (221067844..221080844, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (222001008..222014008, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372937 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:221728686-221729186 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:221750608-221750764 Neighboring gene Sharpr-MPRA regulatory region 4850 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2559 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2560 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:221887070-221888269 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:221888831-221889360 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2561 Neighboring gene dual specificity phosphatase 10 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2562 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2563 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1830 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:221914501-221915138 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:221915139-221915776 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:221915777-221916414 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2566 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2569 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2567 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2568 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2570 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:222009541-222009747 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:222012693-222013892 Neighboring gene uncharacterized LOC124904517 Neighboring gene RNA, U6 small nuclear 403, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr1:222029846-222030731 Neighboring gene long intergenic non-protein coding RNA 2257 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2573 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:222138826-222139438 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:222144341-222144953 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:222144954-222145565 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:222145566-222146178 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:222146179-222146790 Neighboring gene 1q41 HERV-mediated proximal recombination region Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:222146791-222147403 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:222151877-222152619 Neighboring gene long intergenic non-protein coding RNA 2474

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125989.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590966

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    221827666..221840666 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    221067844..221080844 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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