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LINC01914 long intergenic non-protein coding RNA 1914 [ Homo sapiens (human) ]

Gene ID: 101929723, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01914provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1914provided by HGNC
Primary source
HGNC:HGNC:52733
See related
Ensembl:ENSG00000234362 AllianceGenome:HGNC:52733
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 2.3), lung (RPKM 0.8) and 10 other tissues See more
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Genomic context

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Location:
2p21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (41931599..41933723, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (41937083..41939207, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (42158739..42160863, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene RNA, U4 small nuclear 63, pseudogene Neighboring gene long intergenic non-protein coding RNA 1913 Neighboring gene MPRA-validated peak3674 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15625 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11390 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:42157683-42158882 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:42164451-42165045 Neighboring gene uncharacterized LOC124905996 Neighboring gene Sharpr-MPRA regulatory region 382 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:42166828-42167422 Neighboring gene long intergenic non-protein coding RNA 2898 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:42175498-42176148 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15628 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11391 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11392 Neighboring gene VISTA enhancer hs2553 Neighboring gene uncharacterized LOC105374517 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_58491

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Crucial lncRNAs associated with adipocyte differentiation from human adipose-derived stem cells based on co-expression and ceRNA network analyses. Chen K, et al. PeerJ, 2019. PMID 31534842, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AC104654.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110262.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC104654

  2. NR_110263.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC104654
    Related
    ENST00000436551.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    41931599..41933723 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    41937083..41939207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases