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ARNT2-DT ARNT2 divergent transcript [ Homo sapiens (human) ]

Gene ID: 101929560, updated on 10-Oct-2023

Summary

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Official Symbol
ARNT2-DTprovided by HGNC
Official Full Name
ARNT2 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:56077
See related
Ensembl:ENSG00000259495
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
15q25.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (80344853..80404196, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (78208336..78267780, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_41475 Neighboring gene cortexin domain containing 1 Neighboring gene NANOG hESC enhancer GRCh37_chr15:80534358-80534901 Neighboring gene long intergenic non-protein coding RNA 927 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:80610139-80610639 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_41531 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:80696155-80696655 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:80727509-80728008 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr15:80728334-80729533 Neighboring gene aryl hydrocarbon receptor nuclear translocator 2 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:80772226-80773145 Neighboring gene uncharacterized LOC124903537 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:80773146-80774064 Neighboring gene uncharacterized LOC101929586

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder. Ferreira MA, et al. Nat Genet, 2008 Sep. PMID 18711365, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Collaborative genome-wide association analysis supports a role for ANK3 and CACNA1C in bipolar disorder.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184067.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016705
    Related
    ENST00000656160.1

  2. NR_184068.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016705

  3. NR_184069.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016705

  4. NR_184070.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016705

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    80344853..80404196 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    78208336..78267780 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases