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LINC02217 long intergenic non-protein coding RNA 2217 [ Homo sapiens (human) ]

Gene ID: 101929544, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02217provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2217provided by HGNC
Primary source
HGNC:HGNC:53084
See related
Ensembl:ENSG00000248455 AllianceGenome:HGNC:53084
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5p15.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (17404019..17441694)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (17343415..17381101)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (17404128..17441803)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ferritin heavy chain 1 pseudogene 10 Neighboring gene long intergenic non-protein coding RNA 2111 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17400895-17401540 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:17401541-17402186 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:17415024-17415837 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:17415838-17416650 Neighboring gene long intergenic non-protein coding RNA 2218 Neighboring gene TATA-box binding protein associated factor 11 like 1 (pseudogene)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134273.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC106774
    Related
    ENST00000505844.1

  2. NR_134274.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' exon resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AC106774
    Related
    ENST00000507730.5

  3. NR_134275.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' exon resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AC106774
    Related
    ENST00000508677.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    17404019..17441694
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    17343415..17381101
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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