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LINC01615 long intergenic non-protein coding RNA 1615 [ Homo sapiens (human) ]

Gene ID: 101929484, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01615provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1615provided by HGNC
Primary source
HGNC:HGNC:51898
See related
Ensembl:ENSG00000223485 AllianceGenome:HGNC:51898
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
6q27
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (169158092..169162989, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (170509617..170514514, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (169558187..169563084, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724357 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:169469909-169471108 Neighboring gene uncharacterized LOC124901469 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169576328-169576828 Neighboring gene long intergenic non-protein coding RNA 2544 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169585397-169585896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169587933-169588434 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169588435-169588934 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17794 Neighboring gene THBS2 antisense RNA 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:169624128-169625327 Neighboring gene uncharacterized LOC124901470 Neighboring gene thrombospondin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. LINC01615 activates ZEB2 through competitively binding with miR-3653-3p to promote the carcinogenesis of colon cancer cells. Hu Z, et al. Cell Cycle, 2022 Feb. PMID 34965191, Free PMC Article
  2. Identification of LINC01615 as potential metastasis-related long noncoding RNA in hepatocellular carcinoma. Ji D, et al. J Cell Physiol, 2019 Aug. PMID 30556902
  3. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. Wang AG, et al. Biochem Biophys Res Commun, 2006 Jul 7. PMID 16712791

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LINC01615 activates ZEB2 through competitively binding with miR-3653-3p to promote the carcinogenesis of colon cancer cells.
    Title: LINC01615 activates ZEB2 through competitively binding with miR-3653-3p to promote the carcinogenesis of colon cancer cells.
  2. LINC01615 had 72 coexpressed genes, and we carried out the gene ontology (GO) term enrichment for these protein-coding genes
    Title: Identification of LINC01615 as potential metastasis-related long noncoding RNA in hepatocellular carcinoma.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132622.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL136129, CB123670, CB162840

  2. NR_132623.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks three exons and includes one alternate exon, compared to variant 1.
    Source sequence(s)
    CB123670, HY055819
    Related
    ENST00000439703.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    169158092..169162989 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    170509617..170514514 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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