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LINC02099 long intergenic non-protein coding RNA 2099 [ Homo sapiens (human) ]

Gene ID: 101929450, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02099provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2099provided by HGNC
Primary source
HGNC:HGNC:52953
See related
Ensembl:ENSG00000253490 AllianceGenome:HGNC:52953
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
8p12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (29748309..29798492)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (30026711..30076868)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (29605825..29656008)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901926 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:29525986-29527185 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27204 Neighboring gene long intergenic non-protein coding RNA 589 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:29594328-29595186 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27205 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:29627558-29628757 Neighboring gene uncharacterized LOC101929470 Neighboring gene uncharacterized LOC107986884

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Tissue-specific Co-expression of Long Non-coding and Coding RNAs Associated with Breast Cancer. Wu W, et al. Sci Rep, 2016 Sep 6. PMID 27597120, Free PMC Article
  2. Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis. Zhang Y, et al. Arthritis Res Ther, 2016 Oct 6. PMID 27716329, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AC145110.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125814.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shortest transcript.
    Source sequence(s)
    AC145110, BC015784, BC073951, BC082237
    Related
    ENST00000523123.5

  2. NR_125815.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at an internal exon, resulting in a longer transcript than variant 1.
    Source sequence(s)
    AC145110, BC015784, BC047326, BC073951
    Related
    ENST00000517491.1

  3. NR_125816.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks multiple exons and contains two alternate 3' exons, resulting in a longer transcript than variant 1.
    Source sequence(s)
    AC137741, BC073951
    Related
    ENST00000522158.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    29748309..29798492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    30026711..30076868
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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