U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01247 long intergenic non-protein coding RNA 1247 [ Homo sapiens (human) ]

Gene ID: 101929390, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC01247provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1247provided by HGNC
Primary source
HGNC:HGNC:49841
See related
Ensembl:ENSG00000227007 AllianceGenome:HGNC:49841
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
2p25.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (6366010..6375422, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (6387573..6396984, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (6506142..6515554, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:6135557-6136756 Neighboring gene uncharacterized LOC400940 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:6193971-6194712 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:6232422-6233621 Neighboring gene NANOG hESC enhancer GRCh37_chr2:6253851-6254352 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:6289007-6289241 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15240 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:6378134-6379333 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:6396128-6396341 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:6423042-6423564 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:6431337-6432536 Neighboring gene uncharacterized LOC105373401 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15241 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15242 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15243 Neighboring gene uncharacterized LOC105373402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:6598765-6599265 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15244 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_58754 Neighboring gene long intergenic non-protein coding RNA 1824 Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta pseudogene 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110251.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC105253
    Related
    ENST00000448901.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    6366010..6375422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    6387573..6396984 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases