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LINC02037 long intergenic non-protein coding RNA 2037 [ Homo sapiens (human) ]

Gene ID: 101929337, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02037provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2037provided by HGNC
Primary source
HGNC:HGNC:52877
See related
Ensembl:ENSG00000238097 AllianceGenome:HGNC:52877
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in liver (RPKM 1.7) and placenta (RPKM 0.2) See more
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Genomic context

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See LINC02037 in Genome Data Viewer
Location:
3q29
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (194247648..194257772)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (196944407..196954532)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (193965437..193975561)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 215, pseudogene Neighboring gene uncharacterized LOC107986172 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193878773-193879704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193893180-193894093 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21017 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15018 Neighboring gene Sharpr-MPRA regulatory region 6697 Neighboring gene long intergenic non-protein coding RNA 2036 Neighboring gene VISTA enhancer hs1543 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:193932031-193932834 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193949267-193949768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193949769-193950268 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15019 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:193988835-193989766 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:193994438-193995637 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194000115-194000616 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194000617-194001116 Neighboring gene long intergenic non-protein coding RNA 2048 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21018 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21019 Neighboring gene long intergenic non-protein coding RNA 887 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21020

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125402.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC117469
    Related
    ENST00000455821.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    194247648..194257772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    196944407..196954532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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