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KCNMA1-AS2 KCNMA1 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 101929310, updated on 10-Oct-2023

Summary

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Official Symbol
KCNMA1-AS2provided by HGNC
Official Full Name
KCNMA1 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:51214
See related
Ensembl:ENSG00000225497 AllianceGenome:HGNC:51214
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.5) See more
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Genomic context

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See KCNMA1-AS2 in Genome Data Viewer
Location:
10q22.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (77140831..77150100)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (78009260..78018520)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (78900589..78909858)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ATP synthase membrane subunit c locus 1 pseudogene 8 Neighboring gene KCNMA1 antisense RNA 1 Neighboring gene uncharacterized LOC124902466 Neighboring gene potassium calcium-activated channel subfamily M alpha 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:78733040-78734239 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3609 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:78841288-78841844 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:78856955-78857142 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:78873963-78874931 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:78923175-78924374 Neighboring gene NANOG hESC enhancer GRCh37_chr10:78961027-78961555 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:79058612-79058814 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:79074042-79074589 Neighboring gene NANOG hESC enhancer GRCh37_chr10:79084628-79085170 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:79110032-79111231 Neighboring gene KCNMA1 antisense RNA 3 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:79135632-79136831 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:79170031-79170530 Neighboring gene cytochrome c oxidase subunit 6C pseudogene 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120654.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC021032
    Related
    ENST00000428936.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    77140831..77150100
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    78009260..78018520
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases