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LOC101929227 uncharacterized LOC101929227 [ Homo sapiens (human) ]

Gene ID: 101929227, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101929227
Gene description
uncharacterized LOC101929227
See related
Ensembl:ENSG00000250493
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
11q23.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (120867933..120894797, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (120890930..120918496, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (120738642..120765506, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene glutamate ionotropic receptor kainate type subunit 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120498105-120498605 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120504647-120505626 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:120515748-120516454 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:120516455-120517161 Neighboring gene elongin C pseudogene 22 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120530966-120531466 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:120537690-120538200 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:120538201-120538710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120551815-120552316 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120566465-120566964 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5640 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120581457-120582198 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:120630117-120630617 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:120642173-120642737 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120647263-120648044 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120646481-120647262 Neighboring gene NANOG hESC enhancer GRCh37_chr11:120662921-120663458 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120667409-120667910 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120667911-120668410 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:120669439-120670113 Neighboring gene uncharacterized LOC105369532 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120704928-120705428 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:120744786-120745985 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120771587-120772086 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3995 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3996 Neighboring gene Sharpr-MPRA regulatory region 13304 Neighboring gene uncharacterized LOC101929208 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120826209-120826709 Neighboring gene high mobility group box 1 pseudogene 42

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132790.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001929, AP004147, CR936773
    Related
    ENST00000505153.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    120867933..120894797 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    120890930..120918496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases