U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01388 long intergenic non-protein coding RNA 1388 [ Homo sapiens (human) ]

Gene ID: 101929179, updated on 10-Oct-2023

Summary

Official Symbol
LINC01388provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1388provided by HGNC
Primary source
HGNC:HGNC:50660
See related
AllianceGenome:HGNC:50660
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 4.1), spleen (RPKM 0.9) and 2 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC01388 in Genome Data Viewer
Location:
9p24.3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (100999..113795, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (95136..107931, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 138 member C Neighboring gene ReSE screen-validated silencer GRCh37_chr9:46796-46960 Neighboring gene protein piccolo-like Neighboring gene PGM5P3 antisense RNA 1 Neighboring gene NANOG hESC enhancer GRCh37_chr9:82860-83384 Neighboring gene phosphoglucomutase 5 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 4499 Neighboring gene MPRA-validated peak7198 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19719 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28114 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:114547-115153 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:116925-117468 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:117469-118012 Neighboring gene uncharacterized LOC105375942 Neighboring gene forkhead box D4 Neighboring gene Zn regulated GTPase metalloprotein activator 1A

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187611.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL449043
  2. NR_187612.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL449043

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    100999..113795 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    95136..107931 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)