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DLG2-AS2 DLG2 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 101929043, updated on 10-Oct-2023

Summary

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Official Symbol
DLG2-AS2provided by HGNC
Official Full Name
DLG2 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:40179
See related
AllianceGenome:HGNC:40179
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
11q14.1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (83637693..83725390)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (83574158..83661871)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene CCDC90B antisense RNA 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:83149453-83149953 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:83152064-83152757 Neighboring gene CYCS pseudogene 28 Neighboring gene uncharacterized LOC107984425 Neighboring gene DLG2 intron CAGE-defined low expression enhancer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:83298443-83299026 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:83299027-83299610 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5354 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3821 Neighboring gene discs large MAGUK scaffold protein 2 Neighboring gene suppressor of cytokine signaling 6 pseudogene Neighboring gene lactate dehydrogenase A like 6D, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187249.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000773, AP002370

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    83637693..83725390
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    83574158..83661871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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