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GTF2IP13 general transcription factor IIi pseudogene 13 [ Homo sapiens (human) ]

Gene ID: 101929008, updated on 10-Oct-2023

Summary

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Official Symbol
GTF2IP13provided by HGNC
Official Full Name
general transcription factor IIi pseudogene 13provided by HGNC
Primary source
HGNC:HGNC:51725
See related
AllianceGenome:HGNC:51725
Gene type
pseudo
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 7.1), bone marrow (RPKM 4.7) and 24 other tissues See more
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Genomic context

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Location:
7p12.3
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (45769138..45805139)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (45930811..45966887)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18165 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:45621441-45622436 Neighboring gene adenylate cyclase 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:45639347-45639848 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:45648436-45649411 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:45685301-45686214 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:45725783-45726284 Neighboring gene septin 7 pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:45808449-45809226 Neighboring gene uncharacterized LOC124901625 Neighboring gene RNA, U6 small nuclear 241, pseudogene Neighboring gene putative uncharacterized protein FLJ44672 Neighboring gene putative uncharacterized protein FLJ44672 Neighboring gene uncharacterized LOC730234

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    45769138..45805139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007060308.1 RNA Sequence

  2. XR_242174.5 RNA Sequence

  3. XR_007060307.1 RNA Sequence

  4. XR_001745191.2 RNA Sequence

  5. XR_007060305.1 RNA Sequence

  6. XR_007060304.1 RNA Sequence

  7. XR_007060306.1 RNA Sequence

  8. XR_007060309.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    45930811..45966887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078458.1 RNA Sequence

  2. XR_007078460.1 RNA Sequence

  3. XR_007078459.1 RNA Sequence

  4. XR_007078461.1 RNA Sequence

  5. XR_007078463.1 RNA Sequence

  6. XR_007078462.1 RNA Sequence

  7. XR_007078464.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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