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ARHGEF35-AS1 ARHGEF35 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101928605, updated on 10-Oct-2023

Summary

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Official Symbol
ARHGEF35-AS1provided by HGNC
Official Full Name
ARHGEF35 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:41292
See related
AllianceGenome:HGNC:41292
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in thyroid (RPKM 12.6), spleen (RPKM 6.5) and 23 other tissues See more
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Genomic context

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Location:
7q35
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (144195321..144299589)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (145475793..145481498)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (143892414..143996682)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 2 subfamily AO member 1 pseudogene Neighboring gene Rho guanine nucleotide exchange factor 35 Neighboring gene CTAGE family member 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:143901531-143902093 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:143902094-143902655 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:143904530-143905158 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:143905159-143905786 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:143906415-143907042 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:143935567-143936068 Neighboring gene olfactory receptor family 2 subfamily A member 42 Neighboring gene OR2A1 antisense RNA 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:143947746-143948246 Neighboring gene olfactory receptor family 2 subfamily A member 20 pseudogene Neighboring gene Rho guanine nucleotide exchange factor 34, pseudogene Neighboring gene olfactory receptor family 2 subfamily A member 7 Neighboring gene CTAGE family member 8 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:143981368-143982251 Neighboring gene olfactory receptor family 2 subfamily A member 9 pseudogene Neighboring gene olfactory receptor family 2 subfamily A member 1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:144039739-144040663 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:144050275-144050774 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:144062707-144063275 Neighboring gene Rho guanine nucleotide exchange factor 5 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:144075440-144076639

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126022.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004889, AC074386

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    144195321..144299589
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654715.1 Reference GRCh38.p14 PATCHES

    Range
    149882..254193
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    145475793..145481498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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