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LOC101928438 uncharacterized LOC101928438 [ Homo sapiens (human) ]

Gene ID: 101928438, updated on 10-Oct-2023

Summary

Gene symbol
LOC101928438
Gene description
uncharacterized LOC101928438
See related
Ensembl:ENSG00000237461
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.7) and thyroid (RPKM 0.1) See more
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Genomic context

Location:
9q22.33-q31.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (99585786..99819889, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (111757449..111991524, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (102348068..102582171, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902236 Neighboring gene uncharacterized LOC124902233 Neighboring gene uncharacterized LOC107987012 Neighboring gene uncharacterized LOC124902234 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:102431793-102432372 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:102437510-102438010 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28715 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:102581295-102581888 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:102581889-102582482 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20129 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:102584885-102585397 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20130 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:102595258-102596457 Neighboring gene nuclear receptor subfamily 4 group A member 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20131 Neighboring gene STX17 divergent transcript

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109802.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK057451, AL138835
    Related
    ENST00000427039.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    99585786..99819889 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    111757449..111991524 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)