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LINC03070 long intergenic non-protein coding RNA 3070 [ Homo sapiens (human) ]

Gene ID: 101928228, updated on 10-Oct-2023

Summary

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Official Symbol
LINC03070provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3070provided by HGNC
Primary source
HGNC:HGNC:56642
See related
Ensembl:ENSG00000236120
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in placenta (RPKM 3.3), adrenal (RPKM 1.6) and 18 other tissues See more
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Genomic context

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Location:
Xp22.32
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (5719171..5726194, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (5271293..5278585, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chrX:5224281-5225480 Neighboring gene hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta pseudogene Neighboring gene HADHB pseudogene 1 Neighboring gene small nucleolar RNA SNORA20 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:5398809-5399309 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29379 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29380 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:5566951-5567836 Neighboring gene neuroligin 4 X-linked Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:5945089-5945662 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:6119195-6119695 Neighboring gene uncharacterized LOC105373156 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:6194636-6195374 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:6197302-6198185 Neighboring gene microRNA 4770

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AC110995.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    5719171..5726194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_247295.4 RNA Sequence

    Related
    ENST00000666122.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    5271293..5278585 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007091096.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases