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LINC01612 long intergenic non-protein coding RNA 1612 [ Homo sapiens (human) ]

Gene ID: 101928223, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01612provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1612provided by HGNC
Primary source
HGNC:HGNC:51837
See related
Ensembl:ENSG00000250266 AllianceGenome:HGNC:51837
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in colon (RPKM 1.5), liver (RPKM 1.4) and 9 other tissues See more
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Genomic context

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See LINC01612 in Genome Data Viewer
Location:
4q33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (170226591..170283723)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (173584338..173641437)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (171147742..171204874)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986326 Neighboring gene Sharpr-MPRA regulatory region 13980 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:171012523-171013217 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:171031353-171031916 Neighboring gene aminoadipate aminotransferase Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3A pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:171037443-171037979 Neighboring gene Sharpr-MPRA regulatory region 13452 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_76196 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22147 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:171259917-171261116 Neighboring gene long intergenic non-protein coding RNA 2512 Neighboring gene MPRA-validated peak5147 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22149 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:171431628-171432827 Neighboring gene heat shock protein 90 alpha family class A member 6, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Identification of differentially expressed signatures of long non-coding RNAs associated with different metastatic potentials in gastric cancer. Song W, et al. J Gastroenterol, 2016 Feb. PMID 26045391, Free PMC Article
  2. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. Wang AG, et al. Biochem Biophys Res Commun, 2006 Jul 7. PMID 16712791

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • RP11-789C1.1
  • TCONS_00008319

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125889.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068945
    Related
    ENST00000657650.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    170226591..170283723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    173584338..173641437
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases