U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

DENND3-AS1 DENND3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101927963, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
DENND3-AS1provided by HGNC
Official Full Name
DENND3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55537
See related
Ensembl:ENSG00000253210 AllianceGenome:HGNC:55537
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in bone marrow (RPKM 1.4), testis (RPKM 0.8) and 22 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
8q24.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (141124678..141130141, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (142244802..142250265, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902030 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142047320-142047944 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142047945-142048570 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142048571-142049195 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142051549-142052338 Neighboring gene uncharacterized LOC105375784 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142069799-142070496 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:142077205-142077706 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142082933-142083432 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142083433-142084432 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142084444-142085234 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142085235-142086025 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19587 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19588 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28039 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142097256-142097756 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28041 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28040 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:142104647-142104880 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142105126-142106125 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142114470-142115018 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142115019-142115566 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28042 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142121985-142122506 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142122507-142123026 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28043 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28044 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142128597-142129165 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28045 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142137284-142138115 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142138949-142139779 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142144757-142145375 Neighboring gene DENN domain containing 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142163840-142164798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142167099-142167874 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28046 Neighboring gene Sharpr-MPRA regulatory region 5779 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142183015-142183516 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142183517-142184016 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28047 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28048 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142191187-142191687 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28049 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28050 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28051 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142194501-142195455 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142202224-142202724 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142202725-142203225 Neighboring gene uncharacterized LOC105375785 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19590 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142218415-142218922 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142218923-142219430 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142229255-142229790 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142231827-142232566 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142232567-142233305 Neighboring gene solute carrier family 45 member 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142237903-142238756 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142239613-142240468 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142240469-142241324 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142248324-142248883 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142248884-142249442 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:142250482-142251464 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28052 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:142256416-142257096 Neighboring gene SLC45A4 antisense RNA 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183298.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC040970

  2. NR_183299.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC040970

  3. NR_183300.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC040970

  4. NR_183301.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC040970

  5. NR_183302.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC040970

  6. NR_183303.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC040970

  7. NR_183304.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC040970

  8. NR_183305.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC040970

  9. NR_183306.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC040970

  10. NR_183307.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC040970
    Related
    ENST00000667929.1

  11. NR_183308.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC040970

  12. NR_183309.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC040970

  13. NR_183310.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC040970

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    141124678..141130141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    142244802..142250265 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases