U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02660 long intergenic non-protein coding RNA 2660 [ Homo sapiens (human) ]

Gene ID: 101927904, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC02660provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2660provided by HGNC
Primary source
HGNC:HGNC:54146
See related
Ensembl:ENSG00000226005 AllianceGenome:HGNC:54146
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
10p15.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (3912023..3935812)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (3915937..3939814)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2639 Neighboring gene KLF6-I enhancer Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:3894424-3895623 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:3911895-3912394 Neighboring gene uncharacterized LOC124902541 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2916 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:3935366-3936565 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:3937452-3937623 Neighboring gene CAGE-defined B cell enhancer downstream of LOC105376365 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:3951736-3951955 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2918 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2920 Neighboring gene uncharacterized LOC105376367 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:4001589-4002090 Neighboring gene microRNA 6078

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183980.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL513303
    Related
    ENST00000655417.1

  2. NR_183981.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL513303
    Related
    ENST00000657212.1

  3. NR_183982.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL513303
    Related
    ENST00000648503.1

  4. NR_183983.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL513303
    Related
    ENST00000664393.1

  5. NR_183984.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL513303
    Related
    ENST00000656136.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    3912023..3935812
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    3915937..3939814
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases