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GRK5-IT1 GRK5 intronic transcript 1 [ Homo sapiens (human) ]

Gene ID: 101927868, updated on 10-Oct-2023

Summary

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Official Symbol
GRK5-IT1provided by HGNC
Official Full Name
GRK5 intronic transcript 1provided by HGNC
Primary source
HGNC:HGNC:49478
See related
AllianceGenome:HGNC:49478
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
10q26.11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (119207690..119212704)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (120103113..120108107)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:120901959-120902460 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:120924677-120924863 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2869 Neighboring gene sideroflexin 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:120937203-120937847 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4104 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2870 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:120942385-120943130 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_10037 Neighboring gene Sharpr-MPRA regulatory region 12134 Neighboring gene peroxiredoxin 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4105 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4106 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4107 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2871 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2872 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2873 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:120981885-120982396 Neighboring gene RNA, 7SL, cytoplasmic 749, pseudogene Neighboring gene Sharpr-MPRA regulatory region 13114 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4108 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:121000275-121000776 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:121001445-121002011 Neighboring gene G protein-coupled receptor kinase 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4109 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4110 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:121040606-121041106 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:121048231-121048730 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4111 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4112 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4113 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4114 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:121074255-121075454 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:121076215-121076848 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:121076849-121077482 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:121077483-121078116 Neighboring gene uncharacterized LOC105378511

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. Comuzzie AG, et al. PLoS One, 2012. PMID 23251661, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • GRK5 intronic transcript 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186528.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355861

  2. NR_186529.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355861

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    119207690..119212704
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    120103113..120108107
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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