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LINC01429 long intergenic non-protein coding RNA 1429 [ Homo sapiens (human) ]

Gene ID: 101927678, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01429provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1429provided by HGNC
Primary source
HGNC:HGNC:50741
See related
Ensembl:ENSG00000227964 AllianceGenome:HGNC:50741
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
20q13.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (51831797..51862913, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (53603270..53634378, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (50448336..50479452, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ATPase phospholipid transporting 9A (putative) Neighboring gene Sharpr-MPRA regulatory region 2265 Neighboring gene Sharpr-MPRA regulatory region 2507 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:50366388-50366998 Neighboring gene ribosomal protein L29 pseudogene 35 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:50378781-50379465 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:50405009-50405510 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:50405511-50406010 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:50406470-50407036 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:50407037-50407602 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:50411851-50412350 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:50415843-50416766 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18116 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:50417479-50418121 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr20:50418765-50419406 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:50427387-50428259 Neighboring gene spalt like transcription factor 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:50463018-50463518 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:50478941-50479507 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:50503748-50504248 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:50504249-50504749 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:50509256-50509756 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:50509757-50510257 Neighboring gene RNA, U6 small nuclear 347, pseudogene Neighboring gene RNA, U7 small nuclear 6 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110016.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK096285, AL034420
    Related
    ENST00000438154.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    51831797..51862913 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    53603270..53634378 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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