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LINC02405 long intergenic non-protein coding RNA 2405 [ Homo sapiens (human) ]

Gene ID: 101927592, updated on 10-Oct-2023

Summary

Official Symbol
LINC02405provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2405provided by HGNC
Primary source
HGNC:HGNC:53333
See related
Ensembl:ENSG00000249345 AllianceGenome:HGNC:53333
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02405 in Genome Data Viewer
Location:
12q24.32
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (126915227..127060397, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (126925674..127070678, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (127399773..127544942, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370061 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:127386923-127388122 Neighboring gene heat shock protein family E (Hsp10) member 1 pseudogene 20 Neighboring gene uncharacterized LOC105370063 Neighboring gene MPRA-validated peak2032 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7324 Neighboring gene MPRA-validated peak2033 silencer Neighboring gene uncharacterized LOC107984449 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:127584370-127584913 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:127610351-127611550 Neighboring gene NANOG hESC enhancer GRCh37_chr12:127618456-127618957 Neighboring gene uncharacterized LOC107984450 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:127630723-127631400 Neighboring gene uncharacterized LOC105370062

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104646.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078878, AC079949, AC090117, BC032874
    Related
    ENST00000512624.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    126915227..127060397 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_019805499.1 Reference GRCh38.p14 PATCHES

    Range
    6602..6921 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    126925674..127070678 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)