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LINC01275 long intergenic non-protein coding RNA 1275 [ Homo sapiens (human) ]

Gene ID: 101927512, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01275provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1275provided by HGNC
Primary source
HGNC:HGNC:50331
See related
Ensembl:ENSG00000237595 AllianceGenome:HGNC:50331
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
20q13.13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (50162767..50166200, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (51932262..51935696, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene PEDS1-UBE2V1 readthrough Neighboring gene ubiquitin conjugating enzyme E2 V1 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr20:48715799-48716462 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13013 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18083 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:48730039-48730606 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:48732458-48732614 Neighboring gene plasmanylethanolamine desaturase 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:48754882-48755569 Neighboring gene putative uncharacterized protein CCDC28A-AS1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:48760275-48760910 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13014 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:48782079-48783278 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:48788805-48789306 Neighboring gene long intergenic non-protein coding RNA 1273 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:48795707-48796206 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18084 Neighboring gene CEBPB antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13015 Neighboring gene Sharpr-MPRA regulatory region 92 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13017 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13018 Neighboring gene CCAAT enhancer binding protein beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183896.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL161937
    Related
    ENST00000669734.2

  2. NR_183897.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL161937
    Related
    ENST00000691889.1

  3. NR_183898.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL161937
    Related
    ENST00000658174.1

  4. NR_183899.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL161937

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    50162767..50166200 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    51932262..51935696 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases