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TCERG1L-AS1 TCERG1L antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101927489, updated on 10-Oct-2023

Summary

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Official Symbol
TCERG1L-AS1provided by HGNC
Official Full Name
TCERG1L antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:49532
See related
Ensembl:ENSG00000230098 AllianceGenome:HGNC:49532
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See TCERG1L-AS1 in Genome Data Viewer
Location:
10q26.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (131095218..131095777)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (132030258..132030817)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (132893481..132894040)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene microRNA 378c Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:132796630-132797497 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:132797498-132798364 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:132800566-132801066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:132801067-132801567 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:132821112-132821721 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:132822677-132823607 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:132834068-132834857 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:132834858-132835646 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:132845839-132846362 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:132846885-132847407 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:132847408-132847929 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:132848100-132849299 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:132854747-132855248 Neighboring gene uncharacterized LOC107984186 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:132896749-132897250 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:132910233-132910733 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:132912815-132913526 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:132913527-132914236 Neighboring gene transcription elongation regulator 1 like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:132925623-132926277 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:132924967-132925622 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:132933630-132934350 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:132939121-132940002 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:132941811-132942311 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:132945413-132945914 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:132965569-132966069 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:132976970-132977517 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:132977518-132978064 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:132979500-132980020 Neighboring gene uncharacterized LOC105378563 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133048467-133049038 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133047894-133048466 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133049039-133049610 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133050816-133051316 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133051317-133051817 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133057495-133058060 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133060331-133060830 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133062787-133063287 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133075620-133076135 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:133077535-133078178 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:133078179-133078822 Neighboring gene uncharacterized LOC101927461

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120623.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL390203
    Related
    ENST00000436942.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    131095218..131095777
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    132030258..132030817
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases