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LINC01163 long intergenic non-protein coding RNA 1163 [ Homo sapiens (human) ]

Gene ID: 101927381, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01163provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1163provided by HGNC
Primary source
HGNC:HGNC:49530
See related
Ensembl:ENSG00000280953 AllianceGenome:HGNC:49530
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCONS_00017722
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
10q26.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (128285950..128317726)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (129184719..129216500)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (130084214..130115990)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type E Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:129860232-129861431 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:129861772-129862370 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:129867603-129867800 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:129876157-129876658 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:129876659-129877158 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:129889651-129890152 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:129890153-129890652 Neighboring gene lncRNA antisense to PTPRE protein-coding gene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2932 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4201 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2933 Neighboring gene NANOG hESC enhancer GRCh37_chr10:129963700-129964282 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:129970982-129972181 Neighboring gene marker of proliferation Ki-67 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:129999872-130000380 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:130000381-130000888 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:130007752-130008313 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2936 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2934 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2935 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:130109218-130109718 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:130109719-130110219 Neighboring gene uncharacterized LOC124902558 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:130184885-130185386 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:130232943-130233444 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:130238232-130238732 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:130281853-130282352 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:130281351-130281852 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:130317555-130318446 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:130318447-130319337 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:130339525-130340200 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:130365840-130366340 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:130366341-130366841 Neighboring gene VISTA enhancer hs737 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:130424650-130424847 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:130427109-130428308 Neighboring gene uncharacterized LOC105378554 Neighboring gene uncharacterized LOC107984185

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120619.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL390763
    Related
    ENST00000630252.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    128285950..128317726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    129184719..129216500
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases