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LOC101927202 uncharacterized LOC101927202 [ Homo sapiens (human) ]

Gene ID: 101927202, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101927202
Gene description
uncharacterized LOC101927202
See related
Ensembl:ENSG00000290922
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in bone marrow (RPKM 2.4), lymph node (RPKM 0.2) and 3 other tissues See more
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Genomic context

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Location:
22q13.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (39091062..39092851)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (39561387..39563269)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985563 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13740 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:39465577-39466080 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:39466081-39466585 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13741 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19028 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19029 Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3G Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:39477470-39477970 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:39480765-39481338 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:39483746-39484555 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:39484556-39485364 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr22:39492371-39493570 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:39493781-39494667 Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3H Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:39509973-39510947 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19031 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19032 Neighboring gene cytochrome c oxidase subunit 5B pseudogene 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    39091062..39092851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_938259.3 RNA Sequence

  2. XR_007068102.1 RNA Sequence

    Related
    ENST00000684966.1

  3. XR_007068103.1 RNA Sequence

    Related
    ENST00000424436.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    39561387..39563269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090668.1 RNA Sequence

  2. XR_007090669.1 RNA Sequence

  3. XR_007090670.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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