U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

KILH KRT19 interacting long noncoding RNA in hepatocellular carcinoma [ Homo sapiens (human) ]

Gene ID: 101927136, updated on 10-Oct-2023

Summary

Official Symbol
KILHprovided by HGNC
Official Full Name
KRT19 interacting long noncoding RNA in hepatocellular carcinomaprovided by HGNC
Primary source
HGNC:HGNC:56729
See related
Ensembl:ENSG00000231683
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
linc-KILH; lnc-GCLC-1
Expression
Biased expression in gall bladder (RPKM 1.7), kidney (RPKM 1.2) and 1 other tissue See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
6p12.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (53561289..53573275, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (53401208..53413194, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (53426087..53438073, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene Nanog homeobox pseudogene 3 Neighboring gene GCLC antisense RNA 1 Neighboring gene glutamate-cysteine ligase catalytic subunit Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:53407007-53407644 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:53408583-53409324 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17291 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17292 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:53437832-53438332 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:53480209-53481408 Neighboring gene long intergenic non-protein coding RNA 1564 Neighboring gene Sharpr-MPRA regulatory region 10125 Neighboring gene Sharpr-MPRA regulatory region 14005 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24699 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24700 Neighboring gene kelch like family member 31

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110840.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK126334, AL033397
    Related
    ENST00000502390.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    53561289..53573275 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    53401208..53413194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)