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LINC02133 long intergenic non-protein coding RNA 2133 [ Homo sapiens (human) ]

Gene ID: 101927132, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02133provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2133provided by HGNC
Primary source
HGNC:HGNC:52993
See related
Ensembl:ENSG00000261231 AllianceGenome:HGNC:52993
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
16q12.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (47858581..47908431)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (53655389..53705239)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (47892492..47942342)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene phosphorylase kinase regulatory subunit beta Neighboring gene NADH:ubiquinone oxidoreductase subunit A5 pseudogene 11 Neighboring gene NANOG hESC enhancer GRCh37_chr16:47660051-47660552 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:47752345-47752845 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:47767625-47768824 Neighboring gene uncharacterized LOC105371236 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10787 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10788 Neighboring gene NANOG hESC enhancer GRCh37_chr16:47882414-47883106 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:47898419-47899379 Neighboring gene long intergenic non-protein coding RNA 2192 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:47920785-47921984 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr16:47922340-47923153 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:47937837-47938338 Neighboring gene uncharacterized LOC124903685 Neighboring gene uncharacterized LOC105371237 Neighboring gene long intergenic non-protein coding RNA 2134

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110650.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007857, AC140542, AK091370
    Related
    ENST00000569726.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    47858581..47908431
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    53655389..53705239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases