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LINC01506 long intergenic non-protein coding RNA 1506 [ Homo sapiens (human) ]

Gene ID: 101927015, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01506provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1506provided by HGNC
Primary source
HGNC:HGNC:51187
See related
AllianceGenome:HGNC:51187
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in bone marrow (RPKM 3.1), spleen (RPKM 1.6) and 8 other tissues See more
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Genomic context

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See LINC01506 in Genome Data Viewer
Location:
9q21.11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (68543541..68546602, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (80717132..80720194, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (71158457..71161518, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene phosphoglucomutase 5 Neighboring gene uncharacterized LOC124902174 Neighboring gene TMEM252 divergent transcript Neighboring gene transmembrane protein 252 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28436 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:71177322-71177856 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28437 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:71210490-71210990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:71210991-71211491 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:71231697-71232198 Neighboring gene dermatan sulfate epimerase pseudogene Neighboring gene uncharacterized LOC105376071

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109769.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CR745134

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    68543541..68546602 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    80717132..80720194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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