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GTF2IP12 general transcription factor IIi pseudogene 12 [ Homo sapiens (human) ]

Gene ID: 101926918, updated on 10-Oct-2023

Summary

Official Symbol
GTF2IP12provided by HGNC
Official Full Name
general transcription factor IIi pseudogene 12provided by HGNC
Primary source
HGNC:HGNC:51723
See related
Ensembl:ENSG00000291202 AllianceGenome:HGNC:51723
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 1.2), bone marrow (RPKM 0.7) and 25 other tissues See more
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Genomic context

Location:
4q26
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (119449570..119454628, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (122754689..122759746, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (120370725..120375783, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene capicua transcriptional repressor pseudogene Neighboring gene long intergenic non-protein coding RNA 1061 Neighboring gene RNA, U6 small nuclear 1217, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21856 Neighboring gene septin 7 pseudogene 14 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15655 Neighboring gene phosphodiesterase 5A Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:120453269-120453878 Neighboring gene MPRA-validated peak5097 silencer Neighboring gene small nucleolar RNA SNORA11

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135112.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093752, BC070391
    Related
    ENST00000635323.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    119449570..119454628 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    122754689..122759746 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)