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ANKRD18CP ankyrin repeat domain 18C, pseudogene [ Homo sapiens (human) ]

Gene ID: 101926917, updated on 10-Oct-2023

Summary

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Official Symbol
ANKRD18CPprovided by HGNC
Official Full Name
ankyrin repeat domain 18C, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:43601
See related
AllianceGenome:HGNC:43601
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 3.1), prostate (RPKM 0.9) and 23 other tissues See more
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Genomic context

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Location:
9q22.33
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (97155893..97238742, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (109327663..109410545, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (99918175..100001024, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376166 Neighboring gene uncharacterized LOC112268050 Neighboring gene Sharpr-MPRA regulatory region 737 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28656 Neighboring gene SUGT1P4-STRA6LP-CCDC180 readthrough Neighboring gene RNA, U6 small nuclear 798, pseudogene Neighboring gene zinc finger protein 322 pseudogene 1 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:99976487-99977052 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:99977053-99977616 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:99978745-99979310 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:99979311-99979874 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:99981512-99982449 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:99982813-99983428 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:99983429-99984043 Neighboring gene uncharacterized LOC107987025 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:99984044-99984658 Neighboring gene SUGT1P4-STRA6LP readthrough Neighboring gene uncharacterized LOC124902224 Neighboring gene NANOG hESC enhancer GRCh37_chr9:99994442-99995039 Neighboring gene Sharpr-MPRA regulatory region 7929 Neighboring gene vomeronasal 1 receptor 52 pseudogene Neighboring gene SUGT1 pseudogene 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:100033649-100034149 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:100057407-100057584 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20098 Neighboring gene Sharpr-MPRA regulatory region 563 Neighboring gene STRA6 like, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:100074371-100074871 Neighboring gene coiled-coil domain containing 180 Neighboring gene microRNA 1302-8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Other Names

  • ankyrin repeat domain-containing protein 18A-like

Clone Names

  • FLJ25898, FLJ99517

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_136286.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AL590705

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    97155893..97238742 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    109327663..109410545 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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