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DAB1-AS1 DAB1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101926890, updated on 10-Oct-2023

Summary

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Official Symbol
DAB1-AS1provided by HGNC
Official Full Name
DAB1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:49443
See related
Ensembl:ENSG00000226759 AllianceGenome:HGNC:49443
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 15.8) See more
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Genomic context

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Location:
1p32.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (57860581..57863216)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (57739439..57742074)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (58326253..58328888)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene DAB adaptor protein 1 Neighboring gene uncharacterized LOC105378747 Neighboring gene Sharpr-MPRA regulatory region 9062 Neighboring gene Sharpr-MPRA regulatory region 9243 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:57823007-57823637 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:58063767-58063932 Neighboring gene NANOG hESC enhancer GRCh37_chr1:58071492-58072000 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:58088857-58089356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:58088355-58088856 Neighboring gene ribosomal protein S20 pseudogene 5 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:58307132-58307294 Neighboring gene uncharacterized LOC105378746 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:58468631-58469260 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:58469261-58469890 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:58472761-58473729 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:58496743-58497320 Neighboring gene Sharpr-MPRA regulatory region 8485 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104362.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longest transcript.
    Source sequence(s)
    AL109944
    Related
    ENST00000416598.2

  2. NR_104363.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice donor site compared to variant 1.
    Source sequence(s)
    AL109944
    Related
    ENST00000667877.1

  3. NR_104364.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice donor site compared to variant 1.
    Source sequence(s)
    AL109944

  4. NR_104365.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate splice donor site and polyA site compared to variant 1.
    Source sequence(s)
    AL109944
    Related
    ENST00000434141.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    57860581..57863216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    57739439..57742074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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