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AW146154 expressed sequence AW146154 [ Mus musculus (house mouse) ]

Gene ID: 101835, updated on 8-Feb-2024

Summary

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Official Symbol
AW146154provided by MGI
Official Full Name
expressed sequence AW146154provided by MGI
Primary source
MGI:MGI:2142212
See related
Ensembl:ENSMUSG00000074166 AllianceGenome:MGI:2142212
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF101 (zinc finger protein 101). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 3.0), limb E14.5 (RPKM 1.4) and 28 other tissues See more
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Genomic context

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Location:
7 B3; 7 28.25 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (41128298..41149314, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (41478874..41499890, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene 17102 Neighboring gene vomeronasal 2, receptor 57 Neighboring gene STARR-seq mESC enhancer starr_18727 Neighboring gene STARR-seq mESC enhancer starr_18728 Neighboring gene ornithine decarboxylase, structural 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_18729 Neighboring gene predicted gene 6871 Neighboring gene STARR-seq mESC enhancer starr_18730 Neighboring gene STARR-seq mESC enhancer starr_18731 Neighboring gene STARR-seq mESC enhancer starr_18732 Neighboring gene STARR-positive B cell enhancer ABC_E3716 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:48888363-48888572 Neighboring gene predicted gene, 51480

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein LOC101835

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033530.3 → NP_001028702.1  uncharacterized protein LOC101835

    See identical proteins and their annotated locations for NP_001028702.1

    Status: VALIDATED

    Source sequence(s)
    AC109227, AC162792
    Consensus CDS
    CCDS52211.1
    UniProtKB/TrEMBL
    Q3TPQ7
    Related
    ENSMUSP00000096109.4, ENSMUST00000098509.5
    Conserved Domains (5) summary
    smart00349
    Location:4 → 45
    KRAB; krueppel associated box
    COG5048
    Location:157 → 466
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:329 → 349
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 43
    KRAB; KRAB box
    pfam13465
    Location:369 → 394
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    41128298..41149314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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