U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02583 long intergenic non-protein coding RNA 2583 [ Homo sapiens (human) ]

Gene ID: 101805491, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC02583provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2583provided by HGNC
Primary source
HGNC:HGNC:53812
See related
Ensembl:ENSG00000187600 AllianceGenome:HGNC:53812
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.1) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
2p21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (46429190..46441833)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (46434209..46446852)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (46656329..46668972)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:46620302-46620802 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:46620803-46621303 Neighboring gene long intergenic non-protein coding RNA 1820 Neighboring gene uncharacterized LOC124907762 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:46636005-46636579 Neighboring gene Sharpr-MPRA regulatory region 1085/2665 Neighboring gene Sharpr-MPRA regulatory region 2986 Neighboring gene RNA, 7SL, cytoplasmic 817, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15702 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15703 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:46704474-46705040 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:46705041-46705607 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15704 Neighboring gene transmembrane protein 247

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103805.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016912, BC031304
    Related
    ENST00000449601.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    46429190..46441833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    46434209..46446852
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Tools