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Mir9-3hg Mir9-3 host gene [ Mus musculus (house mouse) ]

Gene ID: 101694, updated on 8-Feb-2024

Summary

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Official Symbol
Mir9-3hgprovided by MGI
Official Full Name
Mir9-3 host geneprovided by MGI
Primary source
MGI:MGI:2142071
See related
Ensembl:ENSMUSG00000097023 AllianceGenome:MGI:2142071
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
BS-DRL1
Summary
Is expressed in ventricular layer. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E14 (RPKM 15.2), whole brain E14.5 (RPKM 15.0) and 6 other tissues See more
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Genomic context

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Location:
7 D2; 7 45.06 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (79149774..79184151)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (79500026..79534403)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene Fanconi anemia, complementation group I Neighboring gene protein transport protein Sec61 subunit gamma pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E2240 Neighboring gene polymerase (DNA directed), gamma Neighboring gene nuclear encoded tRNA arginine 5 (anticodon TCG) Neighboring gene STARR-seq mESC enhancer starr_19283 Neighboring gene microRNA 9b-3 Neighboring gene microRNA 9-3 Neighboring gene STARR-seq mESC enhancer starr_19284 Neighboring gene predicted gene, 31740 Neighboring gene Rhesus blood group-associated C glycoprotein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Isolation and Functional Examination of the Long Non-Coding RNA Redrum. Lee Y, et al. Mol Cells, 2018 Feb 28. PMID 29237115, Free PMC Article
  2. MicroRNA-9 regulates neurogenesis in mouse telencephalon by targeting multiple transcription factors. Shibata M, et al. J Neurosci, 2011 Mar 2. PMID 21368052, Free PMC Article
  3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040311.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC110909, AC114988, BM950091

  2. NR_040312.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two exons and includes an alternate exon in the 5' region, compared to variant 1.
    Source sequence(s)
    AC110909, AC114988

  3. NR_040313.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two consecutive internal exons, compared to variant 1.
    Source sequence(s)
    AC110909, AC114988, CX206040

  4. NR_040314.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two consecutive internal exons, compared to variant 1.
    Source sequence(s)
    AC110909, AC114988, AK032343
    Related
    ENSMUST00000181511.10

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    79149774..79184151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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